COMET HIV-1 <> COMET HIV-2 <> COMET HCV
The COMET tool rapidly classifies HIV-1 nucleotide sequences into subtypes. You can submit your sequences either by pasting them in the form (b) or uploading them (a).
Version | Changes | Date |
---|---|---|
2.4 | Additional support up to 118_BC, addition of subtypes not present before for HIV-1 | 2022-07-04 |
2.3 | Additional support for CRF 79_0107 - 96_cpx for HIV-1 | 2018-08-23 |
2.2 | Additional support for CRF 50_A1D - 78_cpx for HIV-1 | 2016-12-01 |
2.1 | Added bootstrap support levels (100 samples per sequence). | 2016-09-22 |
2.0 | Rewritten COMET in GO (Uses much less memory, faster; improved accuracy slightly). | 2016-09-18 |
1.0 | Smaller HIV-1 recombination detection window (should detect more URF), CRF additions to the training set | 2014-03-26 |
0.5 | new HIV-1 thresholds, should slightly improve the results | 2012-06-11 |
0.3 | Additional support for CRF 44_BF - 49_cpx for HIV-1 | 2011-12-20 |
0.1 | Initial version | 2010-03-27 |
Maximum size of each sequence (excluding fasta) 20000 characters
(a) upload the sequences in fasta format (you can compress the file with gzip, max. 8Mo (50MB)):
(b) paste the sequences in fasta format (try out example):
Privacy police:
The submitted sequences are deleted as soon the results have been generated.
If you use COMET, please cite:
Daniel Struck; Glenn Lawyer; Anne-Marie Ternes; Jean-Claude Schmit; Danielle Perez Bercoff.
COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification.
Nucleic Acids Research 2014; doi: 10.1093/nar/gku739
(full text)
Supplementary information:
HIV-1 training set
(*) The COMET-HIV and COMET-HCV services provided herein are "For non-commercial research use only". For all commercial uses, please contact our Exclusive Licensee, ABL SA (www.ablsa.com) at comet@ablsa.com.
Support: