COMET HIV-1 <> COMET HIV-2 <> COMET HCV
The COMET tool rapidly classifies HCV nucleotide sequences into subtypes. You can submit your sequences either by pasting them in the form (b) or uploading them (a).
| Version | Changes | Date |
|---|---|---|
| 1.1 | Re-added bootstrap support levels (100 samples per sequence). | 2016-09-22 |
| 1.0 | Rewritten COMET in GO (Uses much less memory, faster; improved accuracy slightly). | 2016-09-18 |
| 0.2 | new training set based on ICTV HCV Reference Sequence Alignment (2013-09-11) | 2013-09-18 |
| 0.1 | HCV subtyping & bootstrap values to assess quality of prediction | 2012-03-21 |
Maximum size of each sequence (excluding fasta) 20000 characters
(a) upload the sequences in fasta format (you can compress the file with gzip, max. 8Mo (50MB)):
(b) paste the sequences in fasta format (try out example):
Privacy police:
The submitted sequences are deleted as soon the results have been generated.
If you use COMET, please cite:
Daniel Struck; Glenn Lawyer; Anne-Marie Ternes; Jean-Claude Schmit; Danielle Perez Bercoff.
COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification.
Nucleic Acids Research 2014; doi: 10.1093/nar/gku739
(full text)
Supplementary information:
HCV training set
(*) The COMET-HIV and COMET-HCV services provided herein are "For non-commercial research use only". For all commercial uses, please contact our Exclusive Licensee, ABL SA (www.ablsa.com) at comet@ablsa.com.
Support: